Season 2 is the second season of Chowder. The second season ran from 2008 to 2009. It contains 20 episodes (38 segments). It premiered on October 2, 2008 and ended on October 8, 2009.
Mung, Chowder, and Shnitzel need a special syrup from an annoying tree in order to complete a pancake recipe, but soon the tree and his family end up taking over the catering company, leaving them to find a solution.
While babysitting Chowder, Gazpacho believes he has accidentally killed Chowder. Convincing Chowder that he's dead, they both attempt to get his "spirit" to pass on to the other side.
After Chowder eats a group of hot peppers in order to keep them from escaping the kitchen and burn down the city, he begins to breathe fire whenever he opens his mouth, whether he wants to or not.
While helping Mung make a giant bread bowl for a traveling circus troupe, Chowder becomes obsessed with being a member of the Flying Flinger Lingons, and runs away to join them.
Chowder concerns that he won't receive the gift he exactly wants on Knishmas, when he spots Mung tries to make a perfect Schmingerbread house and fail several times. Upon seeing this, he recruits Panini and Gorgonzola to help him make Knish Kringle like Mung's house.
Against Mung's wishes, Chowder secretly starts his own catering company for a bunch of trash-dwelling vermins. However, when these vermin attempt to kill Mung, Shnitzel, and Truffles, Chowder must choose between his friends and his dreams.
When a celebrity chef takes Marzipan City by storm, and wins the admiration of Chowder from Mung, Mung must come up with a catch phrase to win back Chowder's adoration.
Mung, Chowder, and Shnitzel had to take charge of the company's money box following Truffles' sickness. However, they become tempted by the chunk of money and used them for their shopping spree, leaving no money remaining in the box. The gang must now find a way to prevent Truffles from noticing the missing money.
When Mung's old cooking master comes to visit and tells a story about Mung's greatest failure to all of Marzipan City, humiliating him and turning everyone against him, Chowder and Mung travel back to the past to fix his failure.
Mung's old apprentice Gumbo traps Chowder within a huge maze so he can get rid of Mung, but soon finds himself lost within it and tries to find their way back out.
When an intimidating woman bullies Gazpacho into giving her free produce, he and Chowder must think of a way to fight back, by going to the strongest person they know.
When Chowder must pass the upcoming "Basic Learning Test" (B.L.T.'s) or he'll be left unable to cook anymore, Mung is forced to take matters into his own hands and attempt to stop the test.
Truffles gets a new voice after Mung tells her that her old one scares customers away. However, her new voice is so relaxed and non-threatening, so Chowder, Mung, and Shnitzel no longer take her seriously, get carried away, and turn into feral primitive cavemen, leaving Truffles to decide between her new voice and her old one.
Mung's Catering Company has a mystery-themed theater show called "Who Dunit? T'was Not Me: A Victorian Romp Through The World of Barbershop Farce" in order to earn more money, but due to his stupidity, Chowder believes that the play is a series of real events and that Gazpacho will act out the play in real-life as Baron Von Bon-Bon and kill the others. Chowder is then forced to go to Gorgonzola and Ceviché's help in order to stop him.
Chowder drinks a cool drink too fast, causing him to be frozen in a block of ice; in order to get back to the kitchen, Chowder must get the help of two flenguins to get the fur coat of Flazpacho, a flammoth.
Fed up with Mung and everyone criticizing him for his screw-ups, Chowder paints his own world after discovering a blank-canvas dimension behind his bedroom.
When Chowder uses too much power in the kitchen, it causes a blackout to occur. In order to bring back the power, Chowder (along with Gorgonzola) must go to The Tower of Power.
Longing for a companion, Miss Endive cooks a beefcake for a date. Unfortunately, she forgets to bake him 100% completely and, as a result, gets stuck with an ugly and undercooked beefcake named Todd with a catchphrase, "Sheboodles!" Things go worse for Endive once everyone starts to like Todd.
Chowder takes Kimchi to his family's home in the swamp for an arranged marriage and worries about the future of their friendship after Chowder is accused by Porridge of kidnapping Kimchi from his family.